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Molecule

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In science, a molecule is the smallest particle of a pure chemical substance that still retains its chemical composition and properties. A molecule consists of two or more atoms joined by shared pairs of electrons in a chemical bond. It may consist of atoms of the same chemical element, as with oxygen (O2), or of different elements, as with water (H2O).

The word molecule usually refers to an assemblage of multiple atoms held together by covalent bonds, but may also refer to individual atoms which do not participate in covalent bonds, such as noble gases or ions in solution. A substance that consists of covalently bound molecules is a molecular substance or molecular compound.

(left and center) and 2D (right) representations of the terpenoid, atisane. In the 3D model on the left, carbon atoms are represented by gray spheres, white spheres represent the hydrogen atoms and the cylinders represent the bonds. The model is enveloped in a "mesh" representation of the molecular surface, colored by areas of positive (red) and negative (blue) electric charge. In the 3D model (center), the light-blue spheres represent carbon atoms, the white spheres are hydrogen atoms, and the cylinders in between the atoms correspond to single-bonds.

Most molecules are much too small to be seen with the naked eye, but there are exceptions. DNA, a macromolecule, can reach macroscopic sizes.

A property of molecules is the integer ratio of the elements that constitute the compound, the empirical formula. For example, in their pure forms, water is always composed of a 2:1 ratio of hydrogen to oxygen, and ethyl alcohol or ethanol is always composed of carbon, hydrogen, and oxygen in a 2:6:1 ratio. However, this does not determine the kind of molecule uniquely - dimethyl ether has the same ratio as ethanol, for instance. Molecules with the same atoms in different arrangements are called isomers.

Chemical formula on the other hand reflects the exact number of atoms that compose a molecule. The molecular mass is calculated from the chemical formula and is expressed in conventional units equal to 1/12 from the mass of a 12C isotope atom.

Molecules have fixed equilibrium geometries—bond lengths and angles—that are dictated by the laws of quantum mechanics. A pure substance is composed of molecules with the same geometrical structure. The chemical formula and the structure of a molecule are the two important factors that determine its properties, particularly its reactivity. Isomers share a chemical formula but normally have very different properties because of their different structures. Stereoisomers, a particular type of isomers, may have very similar physico-chemical properties and at the same time very different biochemical activities.

Particles in Physics - Composite particles Edit
Molecules | Atoms | Atomic nuclei | Hadrons | Baryons | Mesons | Exotic baryons | Exotic mesons | Tetraquarks | Pentaquarks | Hyperons | Hybrids

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Provides an introduction to what molecules are by focusing on examples that include binary compounds and molecular geometry. Provides an introduction to what molecules are by focusing on examples that include binary compounds and molecular geometry.
Single-molecule spectroscopy and microscopy. Single-molecule biophysics and nanophotonics. Single-molecule spectroscopy and microscopy. Single-molecule biophysics and nanophotonics.
Structure editor. Especially suited for computational chemistry, supports several file formats and operations such as animations and optimizations. License fee required. Structure editor. Especially suited for computational chemistry, supports several file formats and operations such as animations and optimizations. License fee required.
Small molecule database of structures that have primarily been determined ... can be used to orient and examine the molecule, and a dedicated Beowulf computer system to generate ... images. Currently contains over 2,500 molecules. Small molecule database of structures that have primarily been determined ... can be used to orient and examine the molecule, and a dedicated Beowulf computer system to generate ...
Small molecule database of structures that have primarily been determined ... can be used to orient and examine the molecule, and a dedicated Beowulf computer system to generate ... images. Currently contains over 2,500 molecules. Small molecule database of structures that have primarily been determined ... can be used to orient and examine the molecule, and a dedicated Beowulf computer system to generate ...
1100+ molecular models in .pdb or .mol format. 1100+ molecular models in .pdb or .mol format.
Research Collaboratory for Structural Bioinformatics Protein Data Bank entry on DNA. Includes discussion of the properties and structure of DNA. Research Collaboratory for Structural Bioinformatics Protein Data Bank entry on DNA. Includes discussion of the properties and structure of DNA.
Small molecule database of structures that have primarily been determined ... can be used to orient and examine the molecule, and a dedicated Beowulf computer system to generate ... images. Currently contains over 2,500 molecules. Small molecule database of structures that have primarily been determined ... can be used to orient and examine the molecule, and a dedicated Beowulf computer system to generate ...
American Chemical Society resource offering a new molecule every week, along with an image and description ... available. American Chemical Society resource offering a new molecule every week, along with an image and description ...
... students at Wellesley college. Offers news headlines, links, molecule diagrams, and a molecule of the day. Designed for students at Wellesley college. Offers news headlines, links, molecule diagrams, and a molecule of the day.

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